PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G06830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 589aa    MW: 60345.8 Da    PI: 7.2335
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G06830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.27.1e-35198293284
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssa 82 
                      +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +              ++++s++ ++s  +s+
  LPERR01G06830.1 198 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawhptaaaaggnAAPPSSSTHPDSGDNSD 291
                      79**************************************************************777777777766544444444333333333 PP

              TCP  83 sn 84 
                      ++
  LPERR01G06830.1 292 DQ 293
                      32 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-31198268IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257200258IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MQHVLIYGIR RGGGGWTRIA AAAAVASPGK KAAGDLDPRH HHRVGDGGGV GGGGGQEEAD  60
DHRLLQLHHH GGGGGEETPP VPVFHLQHLQ AAAAVRQSSS SAEYALLAPM GDSSGGQSHS  120
PLISFGGGIG HHQHHHHYIQ QFTAQATTPQ PAPPNRARGG RAGGEIVPAM TTTRSRGGGG  180
GGGGEIVAVQ GGHIVRSTGR KDRHSKVCTA RGPRDRRVRL SAHTAIQFYD VQDRLGYDRP  240
SKAVDWLIKN AKDAIDKLEV LPAWHPTAAA AGGNAAPPSS STHPDSGDNS DDQAQAITVA  300
HTAFDFAGGG GGGGGTSFLP PSLDSDAIAD TIKSFFPMGG TNAGGEASSS TAAANSSAMG  360
FNQSYTHDLL SRTGSQSQEL RLSLQSLPDP IFHHHRSHGG AGAGDGNGTT TQQSLFPAAA  420
NYSFGGGGAM WAEQAAAQNQ RMAVPWNMPD PGGGGSGAAG YLFNVSQQAA HMQEAAAAAM  480
GGHGQSQFFF QRGPLQSSNN QPSSERGWPE SVEAENNQMS HHHHHHQGAG LSPSVSSAAA  540
AAIGFAPGVS FSGFRLPTRI QGDEEHNGGG GNGDKPPPPP SSVSSASHH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454945.10.0hypothetical protein SORBIDRAFT_03g001940
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A0D9UY960.0A0A0D9UY96_9ORYZ; Uncharacterized protein
STRINGBRADI2G06890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-46TCP family protein